For those that want to experiment with the KML file you can download it at <a href="http://www.sharcmedia.com/kml/PatentsPerMillion2.kml" rel="nofollow">http://www.sharcmedia.com/kml/PatentsPerMillion2.kml</a><p>Regarding a finer grained heat map it would be cool, but I couldn't find any finer grained data (eg. by US Postcode) on the USPTO site.
It'd be much better if they de-aggregated this information over the surface to create a true 'heat map'. If they did this, you'd probably see true hotspots of patent innovation which I'll bet correspond nicely to startup hubs.