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Biological networks utilize similar algorithms as engineered counterparts

37 pointsby zenonianabout 8 years ago

5 comments

dopuabout 8 years ago
Rather interestingly, you see this sort of mirroring in other areas of neuroscience as well. One example is the simple cell receptive fields in the visual cortex [0]. If you take a natural image, slice it up into a bunch of small patches, and run independent components analysis (ICA) on them [1], you end up with patches that look a lot like simple cell receptive fields, implying that the visual system uses something very similar to ICA to process information.<p>In the same way, you can run ICA on human speech, and what you get back are gammatone filters, [2] which are commonly used to model the auditory system!<p>[0]: <a href="https:&#x2F;&#x2F;en.wikipedia.org&#x2F;wiki&#x2F;Simple_cell" rel="nofollow">https:&#x2F;&#x2F;en.wikipedia.org&#x2F;wiki&#x2F;Simple_cell</a> [1]: <a href="https:&#x2F;&#x2F;en.wikipedia.org&#x2F;wiki&#x2F;Independent_component_analysis" rel="nofollow">https:&#x2F;&#x2F;en.wikipedia.org&#x2F;wiki&#x2F;Independent_component_analysis</a> [2]: <a href="https:&#x2F;&#x2F;en.wikipedia.org&#x2F;wiki&#x2F;Gammatone_filter" rel="nofollow">https:&#x2F;&#x2F;en.wikipedia.org&#x2F;wiki&#x2F;Gammatone_filter</a>
dekhnabout 8 years ago
I think you got the headline backwards- engineered systems use system algorithms to biological networks. Since after all, those biological systems have been doing these sorts of things, <i>without being engineered</i>.<p>That we rediscover biological mechanisms present in our own designs, we should not be surprised.
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100ideasabout 8 years ago
Apropos the 2010 PNAS article &quot;Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks&quot;<p>Abstract: &quot;The genome has often been called the operating system (OS) for a living organism. A computer OS is described by a regulatory control network termed the call graph, which is analogous to the transcriptional regulatory network in a cell. To apply our firsthand knowledge of the architecture of software systems to understand cellular design principles, we present a comparison between the transcriptional regulatory network of a well-studied bacterium (Escherichia coli) and the call graph of a canonical OS (Linux) in terms of topology and evolution. We show that both networks have a fundamentally hierarchical layout, but there is a key difference: The transcriptional regulatory network possesses a few global regulators at the top and many targets at the bottom; conversely, the call graph has many regulators controlling a small set of generic functions.&quot;<p>dx.doi.org&#x2F;10.1073&#x2F;pnas.0914771107 <a href="https:&#x2F;&#x2F;pdfs.semanticscholar.org&#x2F;1e5a&#x2F;bf57c88ad060046c5b2adcc362fe908090a8.pdf" rel="nofollow">https:&#x2F;&#x2F;pdfs.semanticscholar.org&#x2F;1e5a&#x2F;bf57c88ad060046c5b2adc...</a>
lutuspabout 8 years ago
(mystified expression) ... translation: &quot;Biological networks use algorithms similar to engineered counterparts&quot;. But as another correspondent has pointed out, it&#x27;s really the other way around.
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kingkawnabout 8 years ago
Could also be titled, &quot;humans continuously reinvent the wheel, take credit anyway.&quot;
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