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Genomic epidemiology of novel coronavirus (HCoV-19)

134 pointsby 2a0c40about 5 years ago

7 comments

julienchastangabout 5 years ago
Has anyone tried to play the &quot;movie&quot; in the map. As I understand it, there has already been back-propagation of the virus from North America back to Asia. Can anyone confirm this is actually the case?<p>Edit: On a separate note, this tool is one of the best &quot;web meets science&quot; websites I&#x27;ve ever seen. Really nice work for those involved in its creation.
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kire2345about 5 years ago
So am I reading this correctly that for example the strain in Lombardy Italy&#x2F;CDG1&#x2F;2020 (GISAID EPI ISL 412973) from 20.02.2020, has its origin in the strain collected in Bavaria Germany&#x2F;BavPat1&#x2F;2020 (GISAID EPI ISL 406862) from 28.01.2020.<p>So the outbreak in Bavaria that was thought be contained somehow made its way to Italy? Or do these kind of interpretations not make any sense?
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jmartricanabout 5 years ago
Could it be the case that the least symptomatic variants of the virus will be the winning ones in the long run? I suspect that variants that do the most damage will be the ones quarantined and the ones that do least amount of harm (least symptoms) will spread faster.<p>If so, will this virus just domesticate itself (or rather domesticated by humans filtering out those more deadly versions)? By domesticate I mean that it lives with us just like the common cold without causing a 10% dip in the stock market.
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redcalxabout 5 years ago
Iran is ominously missing any cases according to this data. I guess you could say Iran is a known unknown.
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inciampatiabout 5 years ago
Am I reading the documentation correctly, that you have to register at GISAID to download the sequences, and that you can&#x27;t publish any part of the sequences in subsequent papers? Would it be problematic in any way to just release them under a CC-BY-SA-NC license?
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united893about 5 years ago
Had no idea that we could trace tiny differences so elaborately, this is amazing and gives me hope.
psim1about 5 years ago
China always wants to be seen as a global influencer. Now they certainly are, to their great shame.
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