This is not an error users make. It's an error that Brew makes, as a software: not taking the chance to, you know, <i>work for the user</i> instead of otherwise, as computing should do.<p>Just ask the user if they want the configuration be automatically applied for them. 99% will say "yes, please" and the rest will be the commenters here who (fairly enough) don't want their init scripts touched by an installer.